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Emerging Research in Science and Engineering Based on Advanced Experimental and Computational Strategies

Emerging Research in Science and Engineering Based on Advanced Experimental and Computational Strategies

Felipe de Almeida La Porta, Carlton A. Taft

 

Verlag Springer-Verlag, 2020

ISBN 9783030314033 , 528 Seiten

Format PDF, OL

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Emerging Research in Science and Engineering Based on Advanced Experimental and Computational Strategies


 

Preface

6

Contents

8

Strategies and Research with Advanced Engineering Materials

11

1 Plasmon Enhanced Hybrid Photovoltaics

12

Abstract

12

1 Metal Nanoparticles and Localized Surface Plasmons

13

2 Excitons in Semiconductor Nanocrystals

15

3 Fabrication Techniques of Metal NPs, Semiconductor NCs and Metal-Semiconductor Hybrids

18

3.1 Synthesis of Metal NPs

18

3.2 Synthesis of Semiconductor NCs

24

3.3 Synthesis of Metal-Semiconductor Hybrid Nanostructures

28

4 Structural, Electrical and Optical Characterization Techniques

39

5 Structural Methods

40

6 Electrical Measurement Tools

43

7 Optical Methods

47

8 Operational Mechanism and Design Principles in Plasmon Enhanced Photovoltaics

50

9 Concluding Remarks (Outlook and Perspective)

63

References

65

2 Photocatalytic and Photoluminescent Properties of TiO2 Nanocrystals Obtained by the Microwave Solvothermal Method

76

Abstract

76

1 Introduction

77

2 Materials and Methods

78

2.1 Synthesis of Photocatalysts

78

2.2 Photocatalytic Process

79

2.3 Adsorption Tests

79

2.3.1 Adsorption Isotherms

79

3 Results and Discussion

80

3.1 Characterization of Photocatalysts

80

3.2 Adsorption and Photocatalytic Tests

85

4 Conclusions

89

Acknowledgements

89

References

90

3 Magnetic Molecularly Imprinted Polymers for Selective Adsorption of Quinoline: Theoretical and Experimental Studies

93

Abstract

93

1 Introduction

94

2 Materials and Methods

95

2.1 Chemicals

95

2.2 Apparatus

95

2.3 Preparation of ?-Fe2O3

96

2.4 Preparation of MMIP-EC and MMIP-EM

96

2.5 Adsorption Tests

96

2.6 Isotherm Adsorption

98

2.7 Kinetic Studies

99

2.8 Thermodynamic Parameters

100

2.9 Selectivity Tests for the Quinoline Adsorption

100

2.10 Recyclability Studies

101

2.11 Computational Details

101

3 Results and Discussion

101

3.1 Characterization

102

3.1.1 Thermogravimetric Analysis

102

3.1.2 Scanning Electronic Microscopy (SEM)

102

3.1.3 Surface Characterization

103

3.1.4 Fourier Transform Infrared (FTIR)

105

3.2 Adsorption Tests

105

3.2.1 Kinetics Studies

106

3.2.2 Adsorption Isotherms

108

3.2.3 Thermodynamic Parameters

110

3.2.4 Selectivity Tests for the Quinoline Adsorption

110

3.2.5 Recyclability Studies

111

4 Conclusions

112

References

112

4 Insights into Novel Antimicrobial Based on Chitosan Nanoparticles: From a Computational and Experimental Perspective

115

Abstract

115

1 Introduction

116

2 Chitosan and the Importance of Computational Methods

117

3 Molecular Mechanics

118

3.1 Molecular Docking

118

3.2 Quantitative Analysis Between Chemical Structure and Biological Activity

119

3.3 Molecular Dynamics

120

4 Quantum Mechanics

121

4.1 Mechanical and Molecular Mechanics (QM/MM)

121

4.2 Density Functional Theory

122

5 In Silico Studies of Nanoparticles Based on Chitosan and Chitin Derivatives

122

6 Synthesis of Chitosan Nanoparticles

125

6.1 Ionic Gelation or Ionotropic Gelation

126

6.2 Polyelectrolyte Complexation—PEC or Self-assembling Method

127

6.3 Microemulsion Method

128

6.4 Emulsification Solvent Diffusion Method

129

7 Modifications in Chitosan Nanoparticles for the Antimicrobial Effect Potentialization

131

8 Pharmacological Potential from Chitosan and Its Derivatives

134

References

140

5 Effect of Light Stimulation on a Thermo-Cellulolytic Bacterial Consortium Used for the Degradation of Cellulose of Green Coconut Shells

152

Abstract

152

1 Introduction

153

2 Methods

154

2.1 Pretreatment of Coconut Shell

154

2.2 Microbial Sample Collection

155

2.3 Selection of the Thermo-Cellulolytic Microorganisms

155

2.4 Characteristics of the Thermo-Cellulolytic Consortium

155

2.4.1 Cellulolytic Activity

155

2.4.2 Morphological Analysis of the Microbial Consortium

156

2.4.3 Growth Curve of the Microbial Consortium

156

2.5 Evaluation of the Photostimulation of the Microbial Consortium

157

2.6 Assessment of the Lignolytic Activity

157

2.6.1 Nucleic Acid Analysis by Epifluorescence

158

2.7 Quantification of the Cellulose Hydrolysis Products

158

2.7.1 Determination of the Total Reducing Sugars

158

2.7.2 Quantification of the Glucose

159

2.8 Bacterial Quantification by Epifluorescence

161

2.9 Statistical Analysis

161

3 Results and Discussion

161

3.1 Pretreatments of the Coconut Shell

161

3.2 Selection of the Do Thermo-Cellulolytic Consortium

162

3.3 Characteristics of the Thermo-Cellulolytic Consortium

162

3.3.1 Cellulolytic Activity

162

3.3.2 Morphological Analysis of Microbial Consortium

163

3.3.3 Growth Kinetics of the Microbial Consortium

163

3.4 Assessment of the Photobiomodulation of the Thermo-Cellulolytic Consortium

164

3.5 Assessment of the Lignolytic Activity in the Photostimulated Microbial Consortium

167

3.6 Determination of Reducing Sugars

169

3.7 Quantification of Glucose

170

3.8 Microbial Quantification by Epifluorescence

171

4 Conclusion

172

References

172

6 High Coverage of H2, CH4, NH3 and H2O on (110) SnO2 Nanotubes

176

Abstract

176

1 Inorganic Nanotubes

177

2 Metal Oxides

181

2.1 Tin Dioxide (SnO2)

182

3 Adsorption of Gases on SnO2

184

4 Simulation Models for Materials Study and Design

185

5 PM7 and DFT Calculations

186

6 Computational Details

187

7 Results and Discussion

188

8 Conclusion

192

Acknowledgements

192

References

193

7 Surface Engineering in Alloyed CdSe/CdSexCdS1–x/CdS Core-Shell Colloidal Quantum Dots for Enhanced Optoelectronic Applications

196

Abstract

196

1 Introduction

197

2 Samples and Experimental Section

198

3 Results and Discussion

201

3.1 Steady-State and Time-Resolved Photoluminescence

201

3.2 Photoluminescence as a Function of Temperature: Thermal Carrier Transfer

206

4 Conclusions

208

References

209

Biomolecular, Antimicrobial Research Insights and Applications

213

8 Antimicrobial Activity of Nanocrystals

214

Abstract

214

1 Overview of Antimicrobial Resistance

215

2 Metallic Nanocrystals

216

2.1 Synthesis Approaches of MNCs

216

2.2 MNCs Characterization Techniques

218

2.3 Applications of MNCs

219

3 Cellulose Nanocrystals

220

3.1 Nanocelluloses

221

3.2 Antibacterial Studies

222

References

223

9 Connecting Pathway Errors in the Insulin Signaling Cascade: The Molecular Link to Inflammation, Obesity, Cancer, and Alzheimer’s Disease

227

Abstract

227

1 Introduction

229

1.1 Pathophysiology of Insulin Resistance and Resulting Comorbidities

229

1.2 The Insulin Receptor and the Insulin Signaling Cascade

230

1.3 Insulin Resistance and Cell Starvation

232

1.4 Insulin Resistance: Downregulation of the Insulin Signaling Pathway

233

1.5 Insulin Signaling Pathway: Up Regulation of Insulin Transmission Mechanisms

234

2 Insulin Signaling Cascades

235

2.1 The Three-Protein Kinase Signaling Systems

235

2.2 The Insulin Transduction Mechanism

238

2.3 The Role of Insulin as a Regulator, Mediator, and Modulator in the PI3K/Akt and CAP/Cbl Pathways

240

2.4 The Role of Insulin as a Mediator in Ras/MAPK Signaling

241

2.5 The Connection Between PI3K and CAP/Cbl

242

3 Regulation of the Insulin Signaling Pathway

244

3.1 Cancer and Hyperinsulinaemia

244

3.2 Down Regulation: Prevention of Insulin Overload

246

3.3 Insulin Receptor Degradation

247

3.4 IRS Degradation

248

3.5 Phosphatases

248

3.6 Other Phosphatases and Insulin Receptor Regulators

250

3.7 Serine Phosphorylation

250

3.8 Inflammation

252

3.9 Obesity

252

3.10 The Connection Between Inflammation and Obesity

254

3.11 Role of Insulin Signaling Pathway in Vascular Stability

255

4 Implications of Insulin in Alzheimer’s Disease

255

4.1 Alzheimer’s Disease

255

5 Conclusion

258

References

258

10 Prediction of the Three-Dimensional Structure of Phosphate-6-mannose PMI Present in the Cell Membrane of Xanthomonas citri subsp. citri of Interest for the Citrus Canker Control

263

Abstract

263

1 Introduction

264

1.1 Recent Discoveries in Citrus Canker Bacteria

265

1.2 Molecular Modelling: Treading/Folding Recognition and Homology Modelling

266

2 Theoretical Support for the Prediction of a Protein Model Through the Protein Structural Homology Technique

268

3 Development and Evaluation of the Generated PMI Model

270

3.1 Approval Sequence Identification Step

270

3.2 Model Construction and Evaluation Stage

272

3.2.1 Evaluation of Dihedral Angles ? Versus Versus ? Through the Ramachandran Diagram

274

3.2.2 Other Important Parameters for the Analysis (Suite SAVE v5)

275

4 Conclusion

278

Acknowledgements

278

References

278

11 Design of Inhibitors of the Human Fibroblast Activation Protein ? as a Strategy to Hinder Metastasis and Angiogenesis

281

Abstract

281

1 Introduction

282

2 The Role of the Fibroblast Activation Protein ? (FAP) in Cancers

283

3 Strategies for the Design of FAP Inhibitors

284

4 An In Silico SBDD Workflow for the Discovery of FAP Inhibitors

293

5 Conclusions

302

Acknowledgements

302

References

302

12 Pharmacophore Mapping of Natural Products for Pancreatic Lipase Inhibition

308

Abstract

308

1 Introduction

309

2 Natural Products for Drug Discovery and Development

309

3 Obesity

311

4 Pancreatic Lipase as a Target for Anti-obesity Drugs

314

4.1 Myrciaria Genus

316

5 Pharmacophore-Based Drug Design

318

6 Pharmacophore Mapping of Chemical Markers from Myrciaria Genus Species for Pancreatic Lipase Inhibition

320

7 Data Preparation

320

8 Pharmacophore Modeling

323

9 Conclusion

334

References

335

Perspectives and Strategies for Zeolites, Graphitic, Polymeric and Ferrite Systems

342

13 Theoretical Insights About the Chemical Dependent Role of Exchange-Correlation Functionals: A Case Study

343

Abstract

343

1 Introduction

343

1.1 Bravais Lattices

343

2 Band Theory: Fundamentals for Electronic and Optical Properties

345

3 Elastic Properties: Crystalline Materials Behavior Under Mechanic Forces

347

4 Density Functional Theory: The Role of the Functional

348

5 Crystalline Structures

350

6 Computational Method

351

7 Results and Discussion

353

8 Conclusion

357

Acknowledgements

357

References

358

14 Design and Applications in Catalytic Processes of Zeolites Synthesized by the Hydrothermal Method

360

Abstract

360

1 Introduction

361

2 The Hydrothermal Method for Zeolite Synthesis

364

3 Influence of Synthesis Conditions on Zeolite Properties

366

3.1 Aluminum and Silicon Sources

366

3.1.1 Silicon Sources

366

3.1.2 Alumina Sources

368

3.1.3 Alternative Sources of Aluminum and Silicon

369

3.2 Crystallization Time and Temperature

370

3.3 Structure Directing Agents (SDAs) in Zeolite Synthesis

371

4 General Uses of Zeolites

376

4.1 Catalytic Applications of Zeolites

377

5 Conclusion

383

References

383

15 Design and Applications of Spherical Infinite Coordination Polymers (ICPS)

391

Abstract

391

1 Introduction

392

2 Mechanism of Spherical ICP Particle Formation

393

3 Synthesis of ICPs

395

4 Characterization and Property Studies of ICPs

397

5 Applications of ICPs

401

5.1 Luminescent Sensors

401

5.2 Light-Emitting Devices

404

5.3 Bio-related Applications

405

5.4 Other Potential Applications

407

References

408

16 Current Perspective on Synthesis, Properties, and Application of Graphitic Carbon Nitride Related-Compounds

412

Abstract

412

1 Historical Perspective

412

2 Structure and Synthesis

415

3 Modifications to Synthesis

418

4 Applications

422

4.1 Photoredox Applications for Artificial Photosynthesis (Water Splitting and Photofixation of CO2)

422

4.2 Environmental Decontamination

425

Acknowledgements

426

References

426

17 Chemical Modification of Polysaccharides and Applications in Strategic Areas

432

Abstract

432

1 Cellulose

433

1.1 Cellulose Derivatives, Some Properties and Potential Applications

434

2 Chitosan

439

2.1 Chitosan Derivatives, Some Properties and Potential Applications

440

3 Starch

450

3.1 Starch Derivatives, Some Properties and Potential Applications

451

4 Xanthan Gum

454

4.1 Xanthan Gum Derivatives, Some Properties and Potential Applications

455

5 Carrageenan

458

5.1 Carrageenan Derivatives, Some Properties and Potential Applications

459

References

462

18 A TD-DFT Simulation on Organic Polymer: The Case of PEDOT

472

Abstract

472

1 Introduction

473

1.1 Photovoltaic Devices

473

1.2 Charge Carriers in Organic Semiconductors

474

1.3 Density Functional Theory

475

1.4 Time-Dependent Density Functional Theory

476

1.5 Semi-empirical Methods

477

2 Theoretical Methodology

478

2.1 PM6 and DFT Electronic Structure

478

2.2 TD-DFT Single Excitation Calculations

478

3 Results and Discussion

479

3.1 Geometry Optimization

479

3.2 DFT Single Point Energy Calculation

479

3.3 Potential Energy Surface (PES) from DFT

480

3.4 Density of States Analysis (DOS)

481

3.5 TD-DFT Single Excitation

483

3.6 Band-Gap Energy Calculation

485

4 Conclusions

488

Acknowledgements

488

References

488

19 Magnetic Properties of Conducting Polymers

491

Abstract

491

1 Introduction

492

2 Intrinsic Magnetic Behavior in Conducting Polymers

493

3 Effects of Metals and Oxides in the Magnetic Behavior of Conducting Polymers

499

4 Final Remarks

504

Acknowledgements

505

References

505

20 Revised Fundamental Properties and Crystal Engineering of Spinel Ferrite Nanoparticles

509

Abstract

509

1 Introduction

509

2 The Crystalline Structure of Ferrite

512

3 Method of Preparation and Characterization

512

3.1 Preparation Methods

512

3.2 Physical Characterization

515

4 Effects of Morphology on the Magnetic, Photocatalytic and Optical Properties of Spinel Ferrite

517

5 Effects of Doping on the Magnetic, Photocatalytic and Optical Properties of Spinel Ferrite

519

6 Conclusion

523

References

524